CRL Fish Pathogens of Aquaculture Database

Infectious Haematopoietic Necrosis Virus

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Statistics and Configuration

Create a Sequence Report

This form allows you to submit a sequence report to the database. All reports are reviewed and approved by a pathogen expert before they appear in the database.

Submit form	Download values
When you have entered your values into the report, click on the "Submit form" button. Your values will be checked against constraints that have been defined for the database. If there are any values that do not meet these constraints, you will be alerted to this, and asked to correct the values. Values must be corrected before the report input form can be submitted. You are not currently logged in. If you have a user account please login in to continue.	Click on the following button to write the values you have entered to a text file that you can save on your local system.

Submit form

Download values

When you have entered your values into the report, click on the "Submit form" button.

Your values will be checked against constraints that have been defined for the database. If there are any values that do not meet these constraints, you will be alerted to this, and asked to correct the values.

Values must be corrected before the report input form can be submitted.

You are not currently logged in. If you have a user account please login in to continue.

Click on the following button to write the values you have entered to a text file that you can save on your local system.

Sequence Report

Isolate Name ***

Make sure that the isolate name written is identical to the isolate name in the isolate report that you want the sequence report to link to.

Has this specific sequence been added to Genbank? ***

Genbank Accession Number

Has isolate been through cell culture before sequencing? ***

Passage Number for the Virus
If not known, select unknown

Sequence

Identify Gene Regions and Protein Sequence (this will open a new window)

Nucleotide Sequence ***
Enter sequence and press 'Identify Gene Regions and Protein Sequences' located just above. Make sure that added sequence is of high quality otherwise the identification of gene regions and protein sequences will introduce mistakes.

Gene Region(s)
Gene regions identified by alignment to reference sequence. This box is filled out automatically after identification of gene regions and protein sequences.

Protein Name(s)
This box is filled out automatically after identification of gene regions and protein sequences.

Universal Sequence Designator (USD)

Only relevant for mid-G (303 nt) sequences. If you are not familiar with USD the reviewer can help assign this after addition of the sequence to the database.

Sequencing General Comments

Sequencing Project

Sequencing Project Contact
Contact details for sequence e.g. name, address, email address.

Sequencing Method ***
Comments to sequencing method can be added below.

Primer Publication (Pubmed Id)

Publication reference for sequence or if not published then publication reference for sequencing primers used. Add reference as PubMed ID (PMID) or if not possible then write relevant information under Sequencing Method Comments below.

Sequencing Method Comments

Metadata

Report Permissions ***
Who is able to view the report?

User Accounts with permission to view report
Only relevant if restricted permission is chosen. Press 'control' to select multiple users.