Isolate Report
Key
*** : required field
Identifiers
Isolate Name
***
Unique name for isolate. Ensure that the value is unique, and that no other report contains the isolate name.
Synonyms
Pipe-separated list (|) of isolate synonyms. Values should only be added for an isolate that has been published under different names. This is relevant for older isolates; newer isolates should only have one name. The isolate name is defined by person who isolated the pathogen.
Other Isolates in Same Outbreak
Pipe-separated list (|) of other isolate name for other isolates in same outbreak
Relevant References for Isolate
Pipe-separated list (|) of Pubmed Id's of relevant references. References not in Pubmed can be added as text in the field 'General Notes' under 'Notes'
Genomics
Region Used For Genogroup
***
Gene used for genogrouping according to specified publication.
Genogroup Gene Region Publication Reference
Gene region used for genogrouping - publication reference (Pubmed Id)
Genogroup
***
If not genogrouped select 'unknown'. If genogrouped start by selecting region used for genogrouping above.
Geographical Location
Country
***
Comments on Exact Location
Select type of geographical co-ordinates
The database records both UTM and latitude/longitude. When necessary, please ensure that you convert your values using the tool provided.
Latitude
Longitude
Datum / Geodetic System
Datum used for longitude and latitude values
Global UTM Northing
Global UTM Easting
Global UTM Zone Number
Global UTM hemisphere
Sample
Sample Tissue
Number of Fish in Sample
***
Date of Sampling
***
Format YYYY-MM-DD according to ISO 8601. In case date and/or month are unknown add 00. For example, an isolate only known to be from year 2000 will be 2000-00-00.
Environment
Host Aquatic Environment
***
Host
Host Species Latin Name
***
If the host is not present on the list please contact us.
Host NCBI Taxid
Host Species Common Name
Comments on Host Species
Host Origin
***
Note: feral = having escaped from domestication and become wild
Disease Status of Host
***
Epidemiology
Epizootic
***
Answer yes if mortality rate substantially exceeds background mortality. Further information can be added in text box below.
Clinical and Epidemiological Observation in Stock
Notes
General Notes
Private Notes
Information written in this field will only be visible to the user adding the report.
Laboratory Source
Isolate Source
***
Name of Laboratory that isolated the virus
Isolate Contact
Contact details for isolate e.g. name, address, email address
Metadata
Report Permissions
***
Who is able to view the report?.
User Accounts with permission to view report
Only relevant if restricted permission is chosen. Press 'control' to select multiple users.