CRL Fish Pathogens of Aquaculture Database

Infectious Haematopoietic Necrosis Virus

Home
Isolates
Search
- Search Reports
- Search Reports using BLAST
Related Information
- Links
- NCBI Resources
Statistics and Configuration

Create an Isolate Report

Submit form	Download values
This form allows you to submit a report for an isolate to the database. All reports are reviewed and approved by a pathogen expert before they appear in the database. If you would like to record values offline, a print version of the isolate report input form is available. When you have entered your values into the report, click on the "Submit form" button. Your values will be checked against constraints that have been defined for the database. If there are any values that do not meet these constraints, you will be alerted to this, and asked to correct the values. Values must be corrected before the report input form can be submitted. You are not currently logged in. If you have a user account please login in to continue.	Click on the following button to write the values you have entered to a text file that you can save on your local system.

Submit form

Download values

This form allows you to submit a report for an isolate to the database. All reports are reviewed and approved by a pathogen expert before they appear in the database.

If you would like to record values offline, a print version of the isolate report input form is available.

When you have entered your values into the report, click on the "Submit form" button.

Your values will be checked against constraints that have been defined for the database. If there are any values that do not meet these constraints, you will be alerted to this, and asked to correct the values.

Values must be corrected before the report input form can be submitted.

You are not currently logged in. If you have a user account please login in to continue.

Click on the following button to write the values you have entered to a text file that you can save on your local system.

Key

*** : required field

Identifiers

Isolate Name ***

Unique name for isolate. Ensure that the value is unique, and that no other report contains the isolate name.

Synonyms
Pipe-separated list (|) of isolate synonyms. Values should only be added for an isolate that has been published under different names. This is relevant for older isolates; newer isolates should only have one name. The isolate name is defined by person who isolated the pathogen.

Other Isolates in Same Outbreak
Pipe-separated list (|) of other isolate name for other isolates in same outbreak

Relevant References for Isolate
Pipe-separated list (|) of Pubmed Id's of relevant references. References not in Pubmed can be added as text in the field 'General Notes' under 'Notes'

Genomics

Region Used For Genogroup ***
Gene used for genogrouping according to specified publication.

Genogroup Gene Region Publication Reference

Gene region used for genogrouping - publication reference (Pubmed Id)
Genogroup ***
If not genogrouped select 'unknown'. If genogrouped start by selecting region used for genogrouping above.

Geographical Location

Country ***

Comments on Exact Location

Show location on world map

Select type of geographical co-ordinates
The database records both UTM and latitude/longitude. When necessary, please ensure that you convert your values using the tool provided.

Latitude

Longitude

Datum / Geodetic System
Datum used for longitude and latitude values

Global UTM Northing

Global UTM Easting

Global UTM Zone Number

Global UTM hemisphere

Sample

Sample Tissue

Number of Fish in Sample ***

Date of Sampling *** Format YYYY-MM-DD according to ISO 8601. In case date and/or month are unknown add 00. For example, an isolate only known to be from year 2000 will be 2000-00-00.

Environment

Host Aquatic Environment ***

Host

Host information from fishbase.org

Host Species Latin Name ***
If the host is not present on the list please contact us.

Host NCBI Taxid

Host Species Common Name

Comments on Host Species

Host Origin ***
Note: feral = having escaped from domestication and become wild

Disease Status of Host ***

Epidemiology

Epizootic ***
Answer yes if mortality rate substantially exceeds background mortality. Further information can be added in text box below.

Clinical and Epidemiological Observation in Stock

Notes

General Notes

Private Notes
Information written in this field will only be visible to the user adding the report.

Laboratory Source

Isolate Source ***

Name of Laboratory that isolated the virus

Isolate Contact
Contact details for isolate e.g. name, address, email address

Metadata

Report Permissions ***
Who is able to view the report?.

User Accounts with permission to view report
Only relevant if restricted permission is chosen. Press 'control' to select multiple users.