Sequence matcher

This webservice accepts an input sequence and attempts to match it against selection of database sequences, using either FASTA matching or by building a phylogeny using Neighbour-joining.

Step 1

Enter a molecular sequence of DNA, stop codon not included. If no sequence is entered, matching will only be done within the alignment of sequences selected later selected below. Note that Fasta matching requires an input sequence.

FASTA
Neighbour-joining

How to match sequences.

3' UTR
5' UTR
6K ORF
cp ORF
E1 ORF
E2 ORF
E3 ORF
Genome
nsP1 ORF
nsP2 ORF
nsP3 ORF
nsP4 ORF

The genomic region to be matched against. Select all or none.