Sequence matcher

This webservice accepts an input sequence and attempts to match it against selection of database sequences, using either FASTA matching or by building a phylogeny using Neighbour-joining.

Step 1

Enter a molecular sequence of DNA, stop codon not included. If no sequence is entered, matching will only be done within the alignment of sequences selected later selected below. Note that Fasta matching requires an input sequence.

FASTA
Neighbour-joining

How to match sequences.

Coat (capsid) protein ORF
Full length RNA1
Full length RNA2
Protein A (RdRP) ORF
Protein B2 ORF
RNA3
T4 region
T6 region

The genomic region to be matched against. Select all or none.