Sequence matcher

This webservice accepts an input sequence and attempts to match it against selection of database sequences, using either FASTA matching or by building a phylogeny using Neighbour-joining.

Step 1

Enter a molecular sequence of DNA, stop codon not included. If no sequence is entered, matching will only be done within the alignment of sequences selected later selected below. Note that Fasta matching requires an input sequence.

FASTA
Neighbour-joining

How to match sequences.

Complete genome
G-gene ORF
Genome (from N-gene ORF start to L-gene ORF end)
L-gene ORF
M-gene (M2) ORF
mid-G (303 nt)
N-gene ORF
Nv-gene ORF
P-gene (M1) ORF

The genomic region to be matched against. Select all or none.